Publications

  1. Ntekas, I., Takayasu, L., McKellar, D. W., Lujic, J., Mantri, M., Tanis, S., Holdener, C., Schweitzer, P., Cohen, P., Cosgrove, B., De Vlaminck, I. (in preparation). Extending Spatial RNA Sequencing beyond mRNA mapping: The non-coding transcriptional landscape of reproductive tissues.
  2. Jiang, S., Mantri, M., Maymi, V., Leddon, S. A., Schweitzer, P., Bhandari, S., Holdener, C., Ntekas, I., Vollmers, C., Flyak, A. I., Fowell, D. J., Rudd, B. D., De Vlaminck, I. (submitted, 2025). A temporal and spatial atlas of adaptive immune responses in the lymph node following viral infection. https://doi.org/10.1101/2025.01.31.635509
  3. Ntekas, I.*, Takayasu, L.* McKellar, D. W.*, Grodner, B. M., Holdener, C., Schweitzer, P., Sauthoff, M., Shi, Q., Brito, I. L., De Vlaminck, I. (in review, 2024). High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing. https://doi.org/10.1101/2024.11.18.624127
  4. Walter, L. D., Orton, J. L., Ntekas, I., Fong, E. H. H., Maymi, V. I., Rudd, B. D., De Vlaminck, I., Elisseeff, J. H., Cosgrove, B. D. (2024). Transcriptomic analysis of skeletal muscle regeneration across mouse lifespan identifies altered stem cell states associated with senescence. Nature Aging, 4, 1862. https://doi.org/10.1038/s43587-024-00756-3
  5. Grodner, B., Shi, H., Farchione, O., Vill, A. C., Ntekas, I., Diebold, P. J., Zipfel, W. R., Brito, I. L., De Vlaminck, I. (2024). Spatial Mapping of mobile genetic elements and their bacterial hosts in complex microbiomes. Nature Microbiology. https://doi.org/10.1101/2023.06.09.544291
  6. Ntekas, I., De Vlaminck, I. (2023). Spatial methods for microbiome-host interactions. Nature Biotechnology. https://doi.org/10.1038/s41587-023-01996-1